PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 172aa    MW: 18509.5 Da    PI: 10.554
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002900genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.91.4e-1587148162
                  XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                  +ke kr +r+ +NR++A+  R+RKka++ eLe +vk Le++N++L ++l++l++e + l++ 
  Lus10002900  87 DKENKRLKRLLRNRVSAQQARERKKAYLSELEVRVKDLEKKNSELEERLSTLQNENQMLRQI 148
                  5899*****************************************************99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.3E-1587151IPR004827Basic-leucine zipper domain
PfamPF001703.2E-1488149IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.80689152IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.8E-1791151No hitNo description
SuperFamilySSF579593.81E-1391149No hitNo description
CDDcd147044.68E-1792143No hitNo description
PROSITE patternPS00036094109IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MQEQATSSAA ANSLPSSSER SSSSALQLEV KEGMESDDEI RRVPEMGGEP AGASGSGRNA  60
AATVGKDRGG HQGSGEGTRK RGRSPADKEN KRLKRLLRNR VSAQQARERK KAYLSELEVR  120
VKDLEKKNSE LEERLSTLQN ENQMLRQILK NTTASKRSGG NISGAKEDGS L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A3e-17112151342Transcription factor HY5
2oqq_B3e-17112151342Transcription factor HY5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002515537.11e-77PREDICTED: transcription factor HY5
SwissprotO246463e-65HY5_ARATH; Transcription factor HY5
SwissprotQ9SM502e-65HY5_SOLLC; Transcription factor HY5
TrEMBLB9RP681e-77B9RP68_RICCO; Transcription factor hy5, putative
STRINGPOPTR_0018s01530.15e-76(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70643248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.11e-48bZIP family protein